Class AcceptorPoint
- java.lang.Object
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- com.actelion.research.chem.phesa.pharmacophore.AcceptorPoint
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- All Implemented Interfaces:
IPharmacophorePoint
public class AcceptorPoint extends java.lang.Object implements IPharmacophorePoint
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Nested Class Summary
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Nested classes/interfaces inherited from interface com.actelion.research.chem.phesa.pharmacophore.IPharmacophorePoint
IPharmacophorePoint.Functionality
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Constructor Summary
Constructors Constructor Description AcceptorPoint(AcceptorPoint aP)
AcceptorPoint(StereoMolecule mol, int a, java.util.List<java.lang.Integer> neighbours, int interactionClass)
AcceptorPoint(StereoMolecule mol, int a, java.util.List<java.lang.Integer> neighbours, int interactionClass, int acceptorID)
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Method Summary
All Methods Static Methods Instance Methods Concrete Methods Modifier and Type Method Description IPharmacophorePoint
copyPharmacophorePoint()
java.lang.String
encode()
static AcceptorPoint
fromString(java.lang.String ppString, StereoMolecule mol)
int
getAcceptorID()
Coordinates
getCenter()
int
getCenterID()
Coordinates
getDirectionality()
void
getDirectionalityDerivativeCartesian(double[] grad, double[] v, Coordinates di, double sim)
int
getFunctionalityIndex()
int
getInteractionClass()
double
getSimilarity(IPharmacophorePoint pp)
void
setDirectionality(Coordinates directionality)
void
updateAtomIndeces(int[] map)
void
updateCoordinates(Conformer conf)
void
updateCoordinates(StereoMolecule mol)
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Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
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Methods inherited from interface com.actelion.research.chem.phesa.pharmacophore.IPharmacophorePoint
getVectorSimilarity, getVectorSimilarity
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Constructor Detail
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AcceptorPoint
public AcceptorPoint(StereoMolecule mol, int a, java.util.List<java.lang.Integer> neighbours, int interactionClass)
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AcceptorPoint
public AcceptorPoint(AcceptorPoint aP)
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AcceptorPoint
public AcceptorPoint(StereoMolecule mol, int a, java.util.List<java.lang.Integer> neighbours, int interactionClass, int acceptorID)
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Method Detail
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fromString
public static AcceptorPoint fromString(java.lang.String ppString, StereoMolecule mol)
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updateCoordinates
public void updateCoordinates(StereoMolecule mol)
- Specified by:
updateCoordinates
in interfaceIPharmacophorePoint
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updateCoordinates
public void updateCoordinates(Conformer conf)
- Specified by:
updateCoordinates
in interfaceIPharmacophorePoint
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getCenter
public Coordinates getCenter()
- Specified by:
getCenter
in interfaceIPharmacophorePoint
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getDirectionality
public Coordinates getDirectionality()
- Specified by:
getDirectionality
in interfaceIPharmacophorePoint
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encode
public java.lang.String encode()
- Specified by:
encode
in interfaceIPharmacophorePoint
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getSimilarity
public double getSimilarity(IPharmacophorePoint pp)
- Specified by:
getSimilarity
in interfaceIPharmacophorePoint
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getInteractionClass
public int getInteractionClass()
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getCenterID
public int getCenterID()
- Specified by:
getCenterID
in interfaceIPharmacophorePoint
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setDirectionality
public void setDirectionality(Coordinates directionality)
- Specified by:
setDirectionality
in interfaceIPharmacophorePoint
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getAcceptorID
public int getAcceptorID()
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getDirectionalityDerivativeCartesian
public void getDirectionalityDerivativeCartesian(double[] grad, double[] v, Coordinates di, double sim)
- Specified by:
getDirectionalityDerivativeCartesian
in interfaceIPharmacophorePoint
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updateAtomIndeces
public void updateAtomIndeces(int[] map)
- Specified by:
updateAtomIndeces
in interfaceIPharmacophorePoint
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copyPharmacophorePoint
public IPharmacophorePoint copyPharmacophorePoint()
- Specified by:
copyPharmacophorePoint
in interfaceIPharmacophorePoint
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getFunctionalityIndex
public int getFunctionalityIndex()
- Specified by:
getFunctionalityIndex
in interfaceIPharmacophorePoint
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